miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Carthamus tinctorius



ABOUT THIS RECORD

ID: MNEST002904
species: Carthamus tinctorius
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCATCT

miRNA*
TATGAAGATGCTGGTGATT

mismatches: 3
bulges: 2

View larger
pre-miRNA
TTGCTACGTTCTCTGATCTTCATCATCATCATCATCATCTTCATCCTCGTGTTTTTCGTACGTCTCCTGCAATTGCTTAGTGGGAGAAACATCTTGCAAG
CCAAGGCATAGTGAGAATGTCTGATCAAATAGCCAAAGGTCAGGAGTTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGTTGGGGATTCTTTGGATCCAAG
TATGAAGATGCTGGTGATT
TATATGAAAAAGCTGC


dot-bracket secondary structure
..(((...(((..(((...((((((.((((.((((...(((.((((..((.(((((((.((.((((((((.........)))))))).(((((((((..(
(....))...))))).))))((((((...........))))))..)).)))))))...))...((((((.(((((...)))))..))))))))))..)))
.)))).)))).)))))).)
))...)))..)))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P93798|SNAA_VITVI: 0.00000000003

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;